Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs13281125 chr8:71530327 C/T 5.01E-7 491 31.18 30.87 24.27 KM Plot
PRAD rs13281844 chr8:71491316 T/C 8.53E-5 485 31.18 30.73 31.3 KM Plot
PRAD rs13282397 chr8:71539016 G/C 4.69E-5 492 30.93 31.57 24.27 KM Plot
PRAD rs13310524 chr7:158709920 T/C 1.87E-7 473 31.68 29.12 27.4 KM Plot
PRAD rs13345810 chr19:53140195 G/A 1.53E-5 493 30.8 31.33 28.45 KM Plot
PRAD rs13372 chr17:79617705 G/A 2.9E-7 472 30.78 32.4 25.67 KM Plot
PRAD rs13380201 chr15:67973665 A/G 4.35E-5 493 33.37 27.97 27.58 KM Plot
PRAD rs13386418 chr2:178801115 A/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13386657 chr2:178801370 A/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs13391660 chr2:47157975 A/T 6.12E-6 494 30.8 32.4 36.77 KM Plot
PRAD rs13393410 chr2:33943262 G/A 3.42E-5 489 30.77 33.22 24.72 KM Plot
PRAD rs13396204 chr2:178780750 A/T 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs13396207 chr2:178780751 A/C 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs13398748 chr2:47159900 A/C 6.12E-6 494 30.8 32.4 36.77 KM Plot
PRAD rs13400109 chr2:178789179 C/T 4.15E-5 493 30.78 31.93 20.48 KM Plot